The latest news from The Hyve on Open Source solutions for bioinformatics

Irina Pulyakhina

Irina Pulyakhina

Irina received her bachelor in bioengineering and bioinformatics at Moscow State University and came to the Netherlands to continue her studies in bioinformatics at Leiden University Medical Centre, where she received her MSc in metagenomics in 2011 and her PhD in transcriptomics in 2015. After a postdoc at the University of Oxford, where she focused on the epigenetic landscape as a possible contributor to the development of arthritis, she came back to the Netherlands and joined the Hyve in 2016 to work on data analysis.

Recent Posts

Python and R client: data retrieval for analysis made easier

March 05, 2018 | By Irina Pulyakhina 0
To simplify extraction of a specific data subset from a tranSMART data warehouse for analysis with Python or R, The Hyve developed both a tranSMART Python and a R client.
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Identifying real-world security needs: user management in context of real world data and RADAR platform

February 22, 2018 | By Irina Pulyakhina 0
Data, especially real-world medical data, is eminently sensitive. What would happen if all the GPS tracking data of a research project would become public, along with identifiable information? Can data that has been polluted by a hacker still be[…]
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Glowing Bear: the new tranSMART UI is almost here!

January 19, 2018 | By Irina Pulyakhina 0
Update: Glowing Bear is now publicly available! Read the blog post here.   Why tranSMART needed a new UI tranSMART is a data warehouse which enables sharing, storing and analyzing various types of biomedical data. It was originally developed by[…]
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Using wearables in daily medical practice and research: the future is here

January 08, 2018 | By Irina Pulyakhina 0
Wearable devices and wearable sensors have recently become very popular, especially in the areas of fitnessand sports. An important feature of wearable devices and smartwatches is that they provide a continuous, non-stop recording of your activity[…]
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Where your OHDSI journey may bring you

November 30, 2017 | By Irina Pulyakhina 0
One of the solutions that can greatly help you in your research on observational data is OHDSI, an open source platform for Observational Health Data Sciences and Informatics (see this page for an introduction to OHDSI and the concept of[…]
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Your data is safe with us

November 22, 2017 | By Irina Pulyakhina 0
As of the of 30th of October 2017 The Hyve is ISO 27001 certified. This means that we comply with the security requirements of the ISO 27001 standards for the development, hosting and support of open source software, data services and data-analysis[…]
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MatchMiner - algorithmic matching of patient data and clinical trials

April 02, 2017 | By Irina Pulyakhina 0
We are happy and proud to announce that MatchMiner – the result of our long collaboration with Dana Farber Cancer Institute (DFCI) – is soon going open-source and will be available online. MatchMiner is a computational platform for algorithmically[…]
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SCOPE Summit 2017

February 06, 2017 | By Irina Pulyakhina 0
Last week Kees van Bochove and Irina Pulyakhina represented The Hyve at SCOPE 2017. Held in the warm and sunny city of Miami, SCOPE summit focused on bringing together the executives from clinical operations to share their views and experiences and[…]
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CKAN developments at The Hyve

January 03, 2017 | By Irina Pulyakhina 0
CKAN is an open source data portal platform, which was developed by the Open Knowledge Foundation as part of a comprehensive tool suite to promote open data utilization. CKAN makes data accessible by providing tools for publishing, sharing, finding[…]
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IMI stakeholder meeting 2016

October 25, 2016 | By Irina Pulyakhina 0
The Hyve, this time represented by Julia Kurps and Irina Pulyakhina, recently visited the IMI stakeholder meeting, which took place on 28-29 September in Brussels, Belgium. This forum organized by IMI was targeting various audiences and had the[…]
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