The latest news from The Hyve on Open Source solutions for bioinformatics

Adding your own annotations to mutations in cBioPortal

February 09, 2018 | By Sjoerd van Hagen 0
One of the key challenges in cancer research is to find patients that will respond well to targeted drug therapy. Specific mutations in a patient’s tumor can be an indication of the patient’s potential responsiveness to such therapy. Recently we[…]
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Six quick tips to start making your data FAIR

February 01, 2018 | By Jarno van Erp 0
This is an update of a previous blog post which listed four quick and easy tips. We have updated the old tips and added 2 new tips at the end of the post.  Making your data “FAIR” is something you hear more and more. In the age of creating large[…]
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Glowing Bear: the new tranSMART UI is almost here!

January 19, 2018 | By Irina Pulyakhina 0
Why tranSMART needed a new UI tranSMART is a data warehouse which enables sharing, storing and analyzing various types of biomedical data. It was originally developed by Janssen R&D in 2009 and has been a prominent member of the data warehousing[…]
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Expanding analytical power with JupyterHub and HPC

January 10, 2018 | By Jarno van Erp 0
These days, computers need to be able to cope with the vast amounts of data that the Life Science sector is constantly generating. I am not talking about storing the data but about having the ability to perform computationally intensive analysis on[…]
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Using wearables in daily medical practice and research: the future is here

January 08, 2018 | By Irina Pulyakhina 0
Wearable devices and wearable sensors have recently become very popular, especially in the areas of fitnessand sports. An important feature of wearable devices and smartwatches is that they provide a continuous, non-stop recording of your activity[…]
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Simple data loading into cBioPortal with Docker

December 28, 2017 | By Sander Tan 3
In our recent blogpost we discussed an easy solution to set up a local instance of cBioPortal using Docker. The next step is to load a study into the database.
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Health-RI conference 2017: building on a strong foundation

December 21, 2017 | By Maxim Moinat 0
The aim of the third Health-RI (Research Infrastructure) conference, held on 8 December 2017, was to highlight the challenges in bridging the gap between research and medical practice.  Although many challenges still lay ahead, we are delighted to[…]
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Where your OHDSI journey may bring you

November 30, 2017 | By Irina Pulyakhina 0
One of the solutions that can greatly help you in your research on observational data is OHDSI, an open source platform for Observational Health Data Sciences and Informatics (see this page for an introduction to OHDSI and the concept of[…]
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cBioPortal setup made easy using Docker

November 27, 2017 | By Sander Tan 2
The easiest way to install cBioPortal is using Docker. The Hyve has helped a number of clients in the past with installation of cBioPortal on their infrastructure. By building an image from the Dockerfile all dependencies are downloaded and[…]
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Your data is safe with us

November 22, 2017 | By Irina Pulyakhina 0
As of the of 30th of October 2017 The Hyve is ISO 27001 certified. This means that we comply with the security requirements of the ISO 27001 standards for the development, hosting and support of open source software, data services and data-analysis[…]
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