The latest news from The Hyve on Open Source solutions for bioinformatics

IMI/eTriks alignment workshop

June 10, 2015 | By Sjoerd van Hagen 0
During the TranSMART architectural workshop we have discussed the future of TranSMART from a developer perspective. We focussed on creating a solid but flexible, maintainable architecture on which we can build new features without losing too much[…]
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TransLocation: LSP-TranSMART workshop in Copenhagen

May 28, 2015 | By Sjoerd van Hagen 0
On a nice spring evening Tim and I flew to Copenhagen to meet up with the people of Gritsystems. Together we form the technical heart of the implementation team of the ND4BB InfoCenter (a repository for preclinical and clinical data to facilitate[…]
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cBioPortal goes Open Source

May 04, 2015 | By Ward Weistra 0
The cBioPortal for Cancer Genomics is a well known, and well loved, interface for interactive analysis of cancer data. It has been developed, maintained and is also heavily used by the Memorial Sloan Kettering Cancer Center in New York.
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The Hyve presents at Bio-IT: Multi-omics data analysis in tranSMART

April 18, 2015 | By Ward Weistra 2
New scientific discoveries increasingly rely on the integration of data from different types of experiments. The Hyve has extensive experience with using the open source tranSMART platform for the storage and analysis of this multi-omics data.
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TranSMART: Where should the platform go in the coming years?

April 11, 2015 | By Kees van Bochove 0
The TranSMART community has been growing at a very rapid pace. It’s seen more success in the last two years than its creators at J&J and Recombinant would have imagined in 2012. In this article, I would like to lay out some perspectives on where[…]
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Outcomes of the TranSMART Molgenis workshop

April 10, 2015 | By Sjoerd van Hagen 0
The Hyve has active collaborations with several academic groups in The Netherlands. On 24 and 25 March, we organized a joint workshop with the Molgenis team from UMC Groningen (led by Morris Swertz). We collaborate with Molgenis, amongst others, in[…]
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The design for tranSMART 2.0 has started

February 11, 2015 | By Ward Weistra 0
With the recent 'TranSMART 2.0 Architecture Workshop', organized at our The Hyve offices in Utrecht, the basis has been laid for the next phase of tranSMART. The goals for the workshop were formulated as:
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I2B2-tranSMART hackathon brings I2B2 back as clinical data warehouse

February 11, 2015 | By Ward Weistra 0
When tranSMART was conceived originally by Recombinant at Johnson & Johnson, it was supposed to extend the clinical warehouse I2B2 with biomarker data, such as microarray gene expression data, and allow the both datatypes to be integrated. TranSMART[…]
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Interview with our CEO in Het Financieele Dagblad and Business News Radio

December 29, 2014 | By Ward Weistra 0
Notwithstanding the holidays, it has been a great week in publicity for The Hyve. Both revolving around the 'Start-up Kitchen' a great interview with our CEO Kees van Bochove appeared in print in the Dutch Financial Times 'Het Financieele Dagblad'[…]
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The Hyve presents on the new transmart-batch ETL framework

November 21, 2014 | By Ward Weistra 1
With the growing popularity of the tranSMART data mart and analysis platform the quality standards for all its modules are continuously rising. The ETL framework (Extract, Transform, Load; the part that reshapes and uploads the data) has been[…]
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