The latest news from The Hyve on Open Source solutions for bioinformatics

Optimizing scientific data sharing

September 13, 2018 | By Ward Weistra 0
In the Biomedical Sciences, sharing research and patient data is becoming increasingly important. But how to make sure, on the one hand, a scientist receives the information he needs, while at the same time protecting the privacy of patients and[…]
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Easy data import into tranSMART using the Arborist and tranSMART toolkit

July 04, 2018 | By Ward Weistra 0
Even for data scientists and researchers who are experienced tranSMART users, loading data into this data warehouse can be a complicated task. Therefore, The Hyve developed two tools, the Arborist and the tmtk (tranSMART toolkit), to make it easier[…]
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Upscaling tranSMART and Glowing Bear

May 07, 2018 | By Gijs Kant 0
The tranSMART data warehouse was originally designed for use in individual clinical studies with hundreds or thousands participants in which maybe tens of thousands observations were gathered. However, today tranSMART is also being adopted by[…]
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Python and R client: data retrieval for analysis made easier

March 05, 2018 | By Irina Pulyakhina 0
To simplify extraction of a specific data subset from a tranSMART data warehouse for analysis with Python or R, The Hyve developed both a tranSMART Python and a R client.
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Glowing Bear: the new tranSMART UI is almost here!

January 19, 2018 | By Irina Pulyakhina 0
Why tranSMART needed a new UI tranSMART is a data warehouse which enables sharing, storing and analyzing various types of biomedical data. It was originally developed by Janssen R&D in 2009 and has been a prominent member of the data warehousing[…]
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First step towards a FAIR TranSMART

March 27, 2017 | By Jarno van Erp 0
At The Hyve we want to empower scientists by building upon open source software. With tools like TranSMART we store data and give scientists the opportunity to analyse and browse their data. However, these functionalities are only possible inside[…]
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The Hyve and IMI Translocation develop a new responsive User Interface for tranSMART

December 09, 2016 | By Wibo Pipping 0
At the tranSMART Foundation Annual Meeting in La Jolla, CA, we presented the new User Interface for tranSMART that The Hyve is developing as part of IMI Translocation under the working name Glowing Bear.
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TranSMART 17.1: time series, samples, cross-study concepts and more

November 07, 2016 | By Kees van Bochove 0
The tranSMART Annual Meeting 2016 on October 25-27 in La Jolla at UCSD was a great success! We had many good community presentations and trainings in the use of tranSMART worldwide, and also some world-class keynotes by a.o. Larry Smarr and Rob[…]
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GWAS functionality ported to Postgres in MATURA project

March 21, 2016 | By Sjoerd van Hagen 0
In the MRC MATURA project The Hyve has been working with Queen Mary University London to enable GWAS analysis within tranSMART for Postgres, sponsored by Janssen.  As detailed below, we have ported the GWAS functionality in Oracle to Postgres, set[…]
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TranSMART Foundation 2015 annual meeting largest so far

January 04, 2016 | By Ward Weistra 0
 
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