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Agenda for the European i2b2 tranSMART Academic Users Group Conference 2018

October 24, 2018 | By Ward Weistra

Next week The Hyve, as a main i2b2 tranSMART contributor, will be attending the European i2b2 tranSMART Academic Users Group Conference from Oct. 31 to Nov. 1, 2018 in Geneva.

We will be presenting the recently launched Glowing Bear interface for i2b2 tranSMART and host the first European Glowing Bear user group meeting, highlighted in the agenda below! You can learn more about Glowing Bear on https://GlowingBear.app. This also includes a link to the documentation and our demonstration server, where you are able to create your own account to explore the application.

Since the main website for the event currently has availability problems, we are mirroring the agenda for the event below as a service to the community.

Please contact us if you would like to meet up at the event or learn more about how we can help you make your data available!

October 31st, 2018 - Main Event

TIME TITLE PRESENTER
10:00 - 10:10 Welcome presentation
Christian Lovis (University of Geneva / Geneva University Hospitals)
10:10 - 10:15 General Information Jean Louis Raisaro (Lausanne University Hospital)
10:15 - 10:45 Invited talk 1 - "Swiss Personalized Health Network (SPHN)" Peter Meier-Abt (University of Basel)
10:45 - 11:15 Invited talk 2 - "Personalized Health and Related Technologies - ETH Domain Strategic Focus Area (PHRT)" Daniel Vonder Mühll (ETHZ)
11:15 - 12:00 I2b2 tranSMART Foundation Roadmap  
12:00 - 13:00 Lunch Break  
13:00 - 15:00 SESSION 1  
13:00 - 13:30 Invited talk 3 - “Creating the Data Enclave for i2b2 tranSMART” Shawn Murphy (Harvard)
13:30 - 13:45 “Privacy-Enhancing ETL-Processes for Biomedical Data Warehouses” Fabian Prasser (Technical University of Munich)
13:45 - 14:00 “Managing user identities within federated data-discovery networks” Tim Beck (University of Leicester)
14:00 - 14:15 “MedChain: Accountable and Auditable Data Sharing in Distributed Medical Scenarios” Juan Ramon Troncoso-Pastoriza (EPFL)
14:15 - 14:30 “AP-HP Clinical Data Repository: Technology, Process and Policy in the era of the General Data Protection Regulation” Stephane Breant (AP-HP)
14:30 - 15:00 Invited talk 4 - "Harvesting low hanging fruits: Governance structures and technological concepts for a federated analysis as a cross-consortia demonstrator study in the German medical informatics initiative" Thomas Ganslandt (University of Heidelberg)
15:00 - 15:30 Coffee Break (poster session)  
15:30 - 17:30 SESSION 2  
15:30 - 16:00 Invited talk 5 - “Interoperability and Data Integration aspects of the HiGHmed project within the German Medical Informatics Initiative” Ulrich Sax (University Medical Center Goettingen)
16:00 - 16:15 “Towards an easy and accessible tranSMART upload workflow: how a data manager can aid translational researchers in submitting their data” Menno J. de Vries (Netherlands Cancer Institute)
16:15 - 16:30 “The Leipzig Health Atlas - A Research Data Repository utilizing i2b2 and tranSMART” Frank Meineke (Leipzig University)
16:30 - 16:45 “The tranSMART platform – Which kind of translational researchers are interested, who can handle it and how can it be used in the context of education?”
Jan Christoph (Friedrich-Alexander-Universität Erlangen-Nürnberg)
16:45 - 17:00 “The European Open Science goal and Health-RI: facilitating FAIR data stewardship and improving translation times from biology to clinic” Mariska Bierkens (Netherlands Cancer Institute)
17:00 - 17:30 Invited talk 6 - “The Prospective Dutch Colorectal Cancer cohort: providing an infrastructure for scientific research” Geraldine Vink (Integraal Kankercentrum Nederlands)
17:30 - 17:45 Adjourn  
18:45 - 22:00 Conference Dinner NOTE: Additional registration is required

 

November 1st, 2018 - Main Event

TIME TITLE PRESENTER
8:00 - 8:30 Breakfast  
8:30 - 10:00 SESSION 3  
8:30 - 9:00 Invited talk 7 - "How to position i2b2 tranSMART in the Internet for Machines?" Barend Mons (Leiden University Medical Center)
9:00 - 9:15 “Cohort selection on family relationships, absolute and relative time with Glowing Bear 1.0” Ward Weistra (The Hyve)
9:15 - 9:30 “A common and privacy-preserving front-end for open-source clinical research platforms” Mickaël Misbach (The Hyve / EPFL)
9:30 - 9:45 “Fractalis: A scalable open-source service for interactive visual analysis of biomedical data” Sascha Herzinger (University of Luxembourg)
9:45 - 10:00 “Clinical Note Search in i2b2 thought SolR and FHIR” Nicolas Paris (AP-HP)
10:00 - 10:30 Coffee Break (poster session)  
10:30 - 12:00 SESSION 4  
10:30 - 11:00 Invited talk 8 - "i2b2/tranSMART 18.1 – Encouraging FAIR-ness and extensibility" Jason Stedman (Harvard)
11:00 - 11:15 “De-identification of clinical narrative data”
Christophe Gaudet-Blavignac (University of Geneva / Geneva University Hospitals)
11:15 - 11:30 “Implementation of REDCap Dynamic Data Pull on i2b2” Matteo Gabetta (Biomeris / University of Pavia)
11:30 - 11:45 “Integrating Multimodal Radiation Therapy Data into i2b2” Eric Zapletal (AP-HP)
11:45 - 12:15 Invited talk 9 - "Smart Data Analytics Platform for Science" Taghi Aliyev (CERN OpenLab)
12:15 - 13:00 Round table / Panel / Open discussion  
13:00 - 13:10 Concluding Remarks
Dr. Christophe Gaudet-Blavignac and Dr. Jean Louis Raisaro

 

November 1st, 2018 - Special Session – i2b2 tranSMART Foundation (all are welcome)

TIME TITLE  
13:10 - 14:00 Lunch Meeting - Glowing Bear user experiences  
14:00 - 15:00 Open discussion on Foundation Roadmap  
15:00 - 16:00 Platform futures - i2b2, tranSMART, i2b2/tranSMART  
16:00 Adjourn