In our recent blogpost we discussed an easy solution to set up a local instance of cBioPortal using Docker. The next step is to load a study into the database. In cBioPortal Datahub, there are plenty of public studies that have staging files[…]

The aim of the third Health-RI (Research Infrastructure) conference, held on 8 December 2017, was to highlight the challenges in bridging the gap between research and medical practice.  Although many challenges still lay ahead, we are delighted to[…]

The easiest way to install and run cBioPortal is by using Docker. Below are the commands needed to easily install and configure all its dependencies and prerequisites.

One of the solutions that can greatly help you in your research on observational data is OHDSI, an open source platform for Observational Health Data Sciences and Informatics (see this page for an introduction to OHDSI and the concept of[…]

As of the of 30th of October 2017 The Hyve is ISO 27001 certified. This means that we comply with the security requirements of the ISO 27001 standards for the development, hosting and support of open source software, data services and data-analysis[…]

On the 8th of November 2017 we attended the FAIR data tooling meeting organized mainly for developers interested/involved in FAIR. We were invited to present about what we currently do and what we need from the community to increase the FAIRness of[…]

Almost 400 attendees from all over the world, came together during the annual OHDSI symposium, to discuss the progress of the OHDSI platform. From The Hyve, Kees and I attended. During the symposium I gave a talk on the transformation of Swedish EHR[…]

     

One of the most underestimated parts about a FAIR data management plan is archiving your data. How am I going to store my data in such a way that people can access, download and share it? And what are the data archive costs included for storing your[…]