The latest news from The Hyve on Open Source solutions for bioinformatics

TranSMART: Where should the platform go in the coming years?

April 11, 2015 | By Kees van Bochove 0
The TranSMART community has been growing at a very rapid pace. It’s seen more success in the last two years than its creators at J&J and Recombinant would have imagined in 2012. In this article, I would like to lay out some perspectives on where[…]
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Outcomes of the TranSMART Molgenis workshop

April 10, 2015 | By Sjoerd van Hagen 0
The Hyve has active collaborations with several academic groups in The Netherlands. On 24 and 25 March, we organized a joint workshop with the Molgenis team from UMC Groningen (led by Morris Swertz). We collaborate with Molgenis, amongst others, in[…]
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The design for tranSMART 2.0 has started

February 11, 2015 | By Ward Weistra 0
With the recent 'TranSMART 2.0 Architecture Workshop', organized at our The Hyve offices in Utrecht, the basis has been laid for the next phase of tranSMART. The goals for the workshop were formulated as:
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I2B2-tranSMART hackathon brings I2B2 back as clinical data warehouse

February 11, 2015 | By Ward Weistra 0
When tranSMART was conceived originally by Recombinant at Johnson & Johnson, it was supposed to extend the clinical warehouse I2B2 with biomarker data, such as microarray gene expression data, and allow the both datatypes to be integrated. TranSMART[…]
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The Hyve presents on the new transmart-batch ETL framework

November 21, 2014 | By Ward Weistra 1
With the growing popularity of the tranSMART data mart and analysis platform the quality standards for all its modules are continuously rising. The ETL framework (Extract, Transform, Load; the part that reshapes and uploads the data) has been[…]
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Connecting tranSMART with the power of R

June 02, 2014 | By Tim Dorscheidt 0
One of the keys to successful translational medical research is getting the right data to the right people in the right format. Achieving this requires supporting the many relevant data types, ensuring curated data is stored in an easily accessible[…]
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EMIF newsletter May 2014

May 15, 2014 | By Jojanneke Blaak 0
The Hyve works in the EMIF project in collaboration with Janssen on a.o. creating the EMIF platform and curating cohort data for Alzheimer Disease and Metabolics. We will regularly post the newsletters of this project. 
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NBIC 2014

April 16, 2014 | By Marcel van der Kuil 0
Janneke “At this year's NBIC Conference in Lunteren, I was very fortunate to attend a talk by Ilya Smulevich from The Cancer Genome Atlas (TCGA). This was a very inspiring session, where he introduced us to the very rich and heterogenous datasource[…]
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TranSMART - Spotfire hackathon in Boston, USA

April 04, 2014 | By Peter Kok 0
Hackathons are a good method to quickly get a lot of work done on a focussed task, involving multiple parties. This is especially true if the task focusses on the integration of different systems, which requires communication and synchronization[…]
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TranSMART hackathon in Montpellier, France

March 28, 2014 | By Tim Dorscheidt 0
Montpellier is a gorgeous city. And luckily for us, also the place where the hackathon with Sanofi was to be held to finalize an array of improvements we added to tranSMART. The Hyve sent a team of developers and testers to France to wrap up this[…]
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