The latest news from The Hyve on Open Source solutions for bioinformatics

TranSMART Boston Hackathon : Glued together the dispersed features

March 20, 2014 | By Riza Nugraha 0
“Hackathon?” the guy behind the immigration desk at Amsterdam Airport immediately raised his left eyebrow when we told him about our purpose of visit to US. Yes, it was the TranSMART Boston Hackathon; the joint collaboration between the open source[…]
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TraIT Hackathon on connecting applications

March 10, 2014 | By Ward Weistra 0
From March 17 to 19 the The Hyve offices will be home to a hackathon, organized by multiple partners within the CTMM TraIT project. Developers from the Genomics Coordination Centre (GCC), The Hyve, VUmc/BioMedBridges and the University of Leicester[…]
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tranSMART development for IMI eTRIKS

December 02, 2013 | By Ward Weistra 0
  eTRIKS (European Translational Information & Knowledge Management Services) is an Innovative Medicines Initiative (IMI) project which is supporting other IMI projects in their efforts to develop data and knowledge management solutions.
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Rewiring tranSMART from product to platform

May 04, 2013 | By Kees van Bochove 4
A year ago, tranSMART was the internal research datawarehouse for translational research at Johnson & Johnson, and for a number of projects in which J&J companies participated, such as IMI U-BIOPRED. It had already quite some traction at that[…]
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Inital Work on tranSMART’s “core”

April 02, 2013 | By Gustavo Lopes 0
Introduction At the tranSMART Developer Workshop on London last February, there was a consensus that the future of tranSMART should comprehend a core that would implement the essential functionality of the application. The rest would be built upon[…]
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Set up a tranSMART Postgres development environment

March 26, 2013 | By Kees van Bochove 2
Earlier, I blogged about how to set up a tranSMARTdevelopment environment - this was the GPL 1.0 release which has Oracle as a prerequisite. Nowadays, we have a version that runs on Postgres - it still has some problems, but it is promoted as the[…]
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Set up a tranSMART development environment

September 27, 2012 | By Kees van Bochove 0
In an earlier post, I shared my experiences with installing tranSMART on Amazon, but there are now AMI's availabe for the tranSMART 1.0 GA version, which makes that post obsolete. However, I like to be able to code on the road when I have to travel,[…]
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How to run the tranSMART open source package for translational research on Amazon AWS

February 25, 2012 | By Kees van Bochove 0
Great news for translational research: Johnson & Johnson recently open sourced their translational medicine datawarehouse, called tranSMART. A paper on tranSMART was published in 2010, and just a few days ago a first version of the source code was[…]
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Data collection within IMI Translocation

June 23, 2010 | By Janneke Schoots 0
We are happy to announce that The Hyve has become partner in yet another IMI project: ND4BB Translocation (http://www.translocation.eu/). The New Drugs 4 Bad Bugs (ND4BB) initiative is a series of programmes designed to address some of the[…]
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