The latest news from The Hyve on Open Source solutions for bioinformatics

TranSMART data exploration and analysis using Python Client and Jupyter Notebook

December 13, 2018 | By Elisa Cirillo 0
In a previous blog on Glowing Bear we highlighted its visualization features, based on data stored in the tranSMART 17.1 data warehouse. The advantage of Glowing Bear is that it allows users without any programming skills to perform queries and[…]
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Agenda for the European i2b2 tranSMART Academic Users Group Conference 2018

October 24, 2018 | By Ward Weistra 0
Next week The Hyve, as a main i2b2 tranSMART contributor, will be attending the European i2b2 tranSMART Academic Users Group Conference from Oct. 31 to Nov. 1, 2018 in Geneva.
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Glowing Bear officially launched

October 17, 2018 | By Elisa Cirillo 0
The Hyve is happy to announce that Glowing Bear, the new i2b2 tranSMART user interface, was officially launched on 13th September.
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Easy data import into tranSMART using the Arborist and tranSMART toolkit

July 04, 2018 | By Ward Weistra 0
Even for data scientists and researchers who are experienced tranSMART users, loading data into this data warehouse can be a complicated task. Therefore, The Hyve developed two tools, the Arborist and the tmtk (tranSMART toolkit), to make it easier[…]
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Python and R client: data retrieval for analysis made easier

March 05, 2018 | By Irina Pulyakhina 0
To simplify extraction of a specific data subset from a tranSMART data warehouse for analysis with Python or R, The Hyve developed both a tranSMART Python and a R client.
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Glowing Bear: the new tranSMART UI is almost here!

January 19, 2018 | By Irina Pulyakhina 0
Update: Glowing Bear is now publicly available! Read the blog post here.   Why tranSMART needed a new UI tranSMART is a data warehouse which enables sharing, storing and analyzing various types of biomedical data. It was originally developed by[…]
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First step towards a FAIR TranSMART

March 27, 2017 | By Jarno van Erp 0
At The Hyve we want to empower scientists by building upon open source software. With tools like TranSMART we store data and give scientists the opportunity to analyse and browse their data. However, these functionalities are only possible inside[…]
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The Hyve and IMI Translocation develop a new responsive User Interface for tranSMART

December 09, 2016 | By Wibo Pipping 0
At the tranSMART Foundation Annual Meeting in La Jolla, CA, we presented the new User Interface for tranSMART that The Hyve is developing as part of IMI Translocation under the working name Glowing Bear.
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TranSMART 17.1: time series, samples, cross-study concepts and more

November 07, 2016 | By Kees van Bochove 0
The tranSMART Annual Meeting 2016 on October 25-27 in La Jolla at UCSD was a great success! We had many good community presentations and trainings in the use of tranSMART worldwide, and also some world-class keynotes by a.o. Larry Smarr and Rob[…]
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GWAS functionality ported to Postgres in MATURA project

March 21, 2016 | By Sjoerd van Hagen 0
In the MRC MATURA project The Hyve has been working with Queen Mary University London to enable GWAS analysis within tranSMART for Postgres, sponsored by Janssen.  As detailed below, we have ported the GWAS functionality in Oracle to Postgres, set[…]
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